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# Type Title Author Publisher Pub. Year Subjects Call Number
1 مقاله Improvement of pierce-smith converter performance and reduction of splashing using smoothed particle hydrodynamics method Lileh Koohi, A. H. 2013 Copper converter.
Mathematical modeling.
Peirce smith converter.
SPH.
Splashing.
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2 مقاله Investigation and modeling of splashing in the Peirce Smith converter Hasanzadeh Lileh Koohi, A. 2008 Peirce Smith converter.
Splashing.
High speed cameras.
Mathematical models.
Water analysis.
Copper compounds.
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3 مقاله An optical wavelength switching architecture for a high-performance low-power photonic NoC Koohi, S. 2011 Optics.
Area overhead.
Data stream.
Data transmission delay.
Electrical units.
Energy consumption.
Low Power.
Multicasts.
NoC.
Optical data.
Optical packets.
Optical resources.
Optical wavelength.
Passive Router.
Power Consumption.
Proposed architectures.
Simulation-based.
Traffic pattern.
Unicast.
Unicast packets.
Wavelength routing.
Wavelength Switching.
Wavelength-switched.
Architecture.
Computer architecture.
Data communication systems.
Energy utilization.
Fiber optic networks.
Multicasting.
Multiplexing equipment.
Routers.
Wavelength division multiplexing.
Wavelength.
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4 مقاله Scalable architecture for wavelength-switched optical NoC with multicasting capability Koohi, S. 2010 All-optical router.
Area overhead.
Building blockes.
Data transmission.
Electrical power consumption.
Electrical resources.
High bandwidth.
Low-power dissipation.
Microrings.
Multicasting capability.
On-chip networks.
Optical data.
Optical insertion loss.
Optical NoC.
Optical routers.
Proposed architectures.
Router architecture.
Scalable architectures.
Unicast.
Wavelength routing.
Wavelength-switched.
Computer architecture.
Fiber optic networks.
Multicasting.
Multiplexing equipment.
Network architecture.
Scalability.
Systems analysis.
Wavelength.
Wavelength division multiplexing.
Routers.
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5 مقاله PC-mer: An Ultra-fast memory-efficient tool for metagenomics profiling and classification Abadi, S.A.R. 2024 Algorithms.
Computational Biology.
Humans.
Metagenomics.
Software.
Algorithm.
Artificial neural network.
Classification algorithm.
Controlled study.
Decision tree.
Discriminant analysis.
DNA extraction.
Learning algorithm.
Machine learning.
Mathematical analysis.
Memory.
Nerve cell network.
Nonhuman.
Principal component analysis.
Process optimization.
Quantitative structure activity relation.
Random forest.
Support vector machine.
Bioinformatics.
Human.
Procedures.
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6 مقاله Free-space optical spiking neural network Ahmadi, R. 2024 Algorithms.
Brain.
Humans.
Models, Neurological.
Artificial neural network.
Convolutional neural network.
Cooling.
Error.
Feature extraction.
Machine learning.
Noise.
Optics.
Packaging.
Processing speed.
Receptive field.
Simulation.
Spiking neural network.
Action potential.
Biological model.
Physiology.
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7 مقاله An automated ultra-fast, memory-efficient, and accurate method for viral genome classification Abadi, S. A. R. Academic Press Inc, 2023 Classification.
K-mer.
Physicochemical properties.
Viral genome.
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8 مقاله ParaAntiProt provides paratope prediction using antibody and protein language models Kalemati, M. 2024 Antibody Language models.
Paratope prediction.
Protein Language models.
Computational Biology.
Humans.
Models, Molecular.
Single-Domain Antibodies.
Antibody.
Nanobody.
Amino acid sequence.
Bioinformatics.
Complementarity determining region.
Deep learning.
Immunology.
Molecular model.
Procedures.
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9 مقاله High-speed all-optical DNA local sequence alignment based on a three-dimensional artificial neural network Maleki, E. OSA - The Optical Society, 2017 DNA.
Gene encoding.
Neural networks.
Basic local alignment search tools.
Genome sequences.
Global alignment.
Local sequence alignments.
Matching techniques.
Optical correlators.
Optical processing.
Parallel processing.
Alignment.
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10 مقاله Speeding up DNA sequence alignment by optical correlator Mozafari, F. Elsevier Ltd, 2018 Bioinformatics.
DNA sequence alignment.
Fourier optics.
Metamaterial.
Optical computing.
Correlators.
Dielectric materials.
DNA.
DNA sequences.
Electronic cooling.
Energy utilization.
Green computing.
Metamaterials.
Optical data processing.
Parallel architectures.
Plasmonics.
Wave transmission.
Computing architecture.
DNA sequence alignments.
DNA sequence comparison.
Electrical processing.
Electronic computers.
Energy consumption levels.
Implementation approach.
Proposed architectures.
Optical correlation.
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11 مقاله All-optical DNA variant discovery utilizing extended DV-curve-based wavelength modulation Maleki, E. OSA - The Optical Society, 2018 Alignment.
Curve fitting.
DNA sequences.
Genes.
Genetic engineering.
Graphene.
Modulation.
Numerical methods.
Genome sequences.
Global alignment.
Local alignment.
Optical correlators.
Optical processing.
Optical signals.
Post analysis.
Wavelength modulation.
Optical signal processing.
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12 مقاله Pip-SW: pipeline architectures for accelerating Smith-Waterman algorithm on FPGA platforms Kalemati, M. IEEE, 2024 FPGA.
Hardware acceleration.
Pipeline architectures.
Sequence alignment.
Smith-Waterman.
Analog storage.
Benchmarking.
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13 مقاله Optical pattern generator for efficient bio-data encoding in a photonic sequence comparison architecture Akbari Rokn Abadi, S. Public Library of Science, 2021 Adenine.
Bacterial DNA.
Cytosine.
Guanine.
Case study.
Cross correlation.
Data accuracy.
Genetic algorithm.
Image processing.
Information processing.
Nonhuman.
Pattern recognition.
Photonics.
Salmonella.
Sensitivity analysis.
Velocity.
Whole genome sequencing.
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14 مقاله Optical pattern generator for efficient bio-data encoding in a photonic sequence comparison architecture Akbari Rokn Abadi, S. Public Library of Science, 2021 Adenine.
Bacterial DNA.
Cytosine.
Guanine.
Case study.
Cross correlation.
Data accuracy.
Genetic algorithm.
Image processing.
Information processing.
Nonhuman.
Pattern recognition.
Photonics.
Salmonella.
Sensitivity analysis.
Velocity.
Whole genome sequencing.
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15 مقاله Integration in analog optical computing using metasurfaces revisited: toward ideal optical integration Babashah, H. OSA - The Optical Society, 2017 Metamaterials.
Optical data processing.
Signal processing.
Dielectric lens.
Fourier domains.
Low-frequency.
Optical integration.
Optical integrators.
Output response.
Output signal.
Signal processor.
Integration.
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16 مقاله Temporal analog optical computing using an on-chip fully reconfigurable photonic signal processor Babashah, H. Elsevier Ltd, 2019 Dispersion.
Fourier optics.
Integrability.
Integrated optics.
Nonlinear optics.
Optoelectronics.
Chirp modulation.
Dispersion (waves)
Four wave mixing.
Fourier transforms.
Integration.
Light modulators.
Linear transformations.
Optical data processing.
Optoelectronic devices.
All-optical signal processing.
Arbitrary transfer functions.
Dispersive Fourier transforms.
Integrated signal processing.
Mathematical operations.
Photonic-signal processors.
Reconfigurable photonics.
Optical signal processing.
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17 مقاله WalkIm: Compact image-based encoding for high-performance classification of biological sequences using simple tuning-free CNNs Akbari Rokn Abadi, S. Public Library of Science, 2022 Adoption.
Coronavirinae.
Diagnostic test accuracy study.
Metagenomics.
Nonhuman.
Velocity.
Information processing.
Metagenomics.
Methodology.
Data Collection.
Metagenomics.
Neural Networks, Computer.
Research Design.
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18 مقاله A new profiling approach for DNA sequences based on the nucleotides' physicochemical features for accurate analysis of SARS-CoV-2 genomes Akbari Rokn Abadi, S. BioMed Central Ltd, 2023 Alignment-free.
Classification.
Comparison.
k-mer.
SARS-CoV-2.
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19 مقاله All-optical wavelength-routed architecture for a power-efficient network on chip Koohi, S. 2014 Low-power design.
Network architecture and design.
Data communication systems.
Distributed computer systems.
Energy utilization.
Low power electronics.
Microprocessor chips.
Network architecture.
Routers.
All optical switch.
Data transmission delay.
Deterministic routing algorithms.
Emerging technologies.
Interconnection architecture.
Power and energy consumption.
Proposed architectures.
Computer architecture.
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20 مقاله Hierarchical opto-electrical on-chip network for future multiprocessor architectures Koohi, S. 2011 Optical NoC.
Analytical model.
Contention-free.
Data transmission delay.
Energy consumption.
Hierarchical architectures.
Hierarchy.
Its efficiencies.
Lower bounds.
Multi processor architecture.
Network size.
New technologies.
On-chip interconnects.
On-chip networks.
On-chip optical interconnects.
Optical networks.
Optical NoC.
Optical transmissions.
Packet size distribution.
Power consumption.
Power dissipation.
Power reductions.
Processing core.
Proposed architectures.
Scalability problems.
Simulation-based.
Traffic pattern.
Electric losses.
Energy utilization.
Fiber optic networks.
Light transmission.
Mathematical models.
Optical interconnects.
Optical links.
Scalability.
VLSI circuits.
Network architecture.
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