Sharif Digital Repository

Improvement of pierce-smith converter performance and reduction of splashing using smoothed particle hydrodynamics method

Author

Lileh Koohi, A. H.

Pub. Year

2013

Subjects

Copper converter. / Mathematical modeling. / Peirce smith converter. / SPH. / Splashing.

Investigation and modeling of splashing in the Peirce Smith converter

Author

Hasanzadeh Lileh Koohi, A.

Pub. Year

2008

Subjects

Peirce Smith converter. / Splashing. / High speed cameras. / Mathematical models. / Water analysis. / Copper compounds.

An optical wavelength switching architecture for a high-performance low-power photonic NoC

Author

Koohi, S.

Pub. Year

2011

Subjects

Optics. / Area overhead. / Data stream. / Data transmission delay. / Electrical units. / Energy consumption. / Low Power. / Multicasts. / NoC. / Optical data. / Optical packets. / Optical resources. / Optical wavelength. / Passive Router. / Power Consumption. / Proposed architectures. / Simulation-based. / Traffic pattern. / Unicast. / Unicast packets. / Wavelength routing. / Wavelength Switching. / Wavelength-switched. / Architecture. / Computer architecture. / Data communication systems. / Energy utilization. / Fiber optic networks. / Multicasting. / Multiplexing equipment. / Routers. / Wavelength division multiplexing. / Wavelength.

Scalable architecture for wavelength-switched optical NoC with multicasting capability

Author

Koohi, S.

Pub. Year

2010

Subjects

All-optical router. / Area overhead. / Building blockes. / Data transmission. / Electrical power consumption. / Electrical resources. / High bandwidth. / Low-power dissipation. / Microrings. / Multicasting capability. / On-chip networks. / Optical data. / Optical insertion loss. / Optical NoC. / Optical routers. / Proposed architectures. / Router architecture. / Scalable architectures. / Unicast. / Wavelength routing. / Wavelength-switched. / Computer architecture. / Fiber optic networks. / Multicasting. / Multiplexing equipment. / Network architecture. / Scalability. / Systems analysis. / Wavelength. / Wavelength division multiplexing. / Routers.

PC-mer: An Ultra-fast memory-efficient tool for metagenomics profiling and classification

Author

Abadi, S.A.R.

Pub. Year

2024

Subjects

Algorithms. / Computational Biology. / Humans. / Metagenomics. / Software. / Algorithm. / Artificial neural network. / Classification algorithm. / Controlled study. / Decision tree. / Discriminant analysis. / DNA extraction. / Learning algorithm. / Machine learning. / Mathematical analysis. / Memory. / Nerve cell network. / Nonhuman. / Principal component analysis. / Process optimization. / Quantitative structure activity relation. / Random forest. / Support vector machine. / Bioinformatics. / Human. / Procedures.

Free-space optical spiking neural network

Author

Ahmadi, R.

Pub. Year

2024

Subjects

Algorithms. / Brain. / Humans. / Models, Neurological. / Artificial neural network. / Convolutional neural network. / Cooling. / Error. / Feature extraction. / Machine learning. / Noise. / Optics. / Packaging. / Processing speed. / Receptive field. / Simulation. / Spiking neural network. / Action potential. / Biological model. / Physiology.

An automated ultra-fast, memory-efficient, and accurate method for viral genome classification

Author

Abadi, S. A. R.

Publisher

Academic Press Inc,

Pub. Year

2023

Subjects

Classification. / K-mer. / Physicochemical properties. / Viral genome.

ParaAntiProt provides paratope prediction using antibody and protein language models

Author

Kalemati, M.

Pub. Year

2024

Subjects

Antibody Language models. / Paratope prediction. / Protein Language models. / Computational Biology. / Humans. / Models, Molecular. / Single-Domain Antibodies. / Antibody. / Nanobody. / Amino acid sequence. / Bioinformatics. / Complementarity determining region. / Deep learning. / Immunology. / Molecular model. / Procedures.

High-speed all-optical DNA local sequence alignment based on a three-dimensional artificial neural network

Author

Maleki, E.

Publisher

OSA - The Optical Society,

Pub. Year

2017

Subjects

DNA. / Gene encoding. / Neural networks. / Basic local alignment search tools. / Genome sequences. / Global alignment. / Local sequence alignments. / Matching techniques. / Optical correlators. / Optical processing. / Parallel processing. / Alignment.

Speeding up DNA sequence alignment by optical correlator

Author

Mozafari, F.

Publisher

Elsevier Ltd,

Pub. Year

2018

Subjects

Bioinformatics. / DNA sequence alignment. / Fourier optics. / Metamaterial. / Optical computing. / Correlators. / Dielectric materials. / DNA. / DNA sequences. / Electronic cooling. / Energy utilization. / Green computing. / Metamaterials. / Optical data processing. / Parallel architectures. / Plasmonics. / Wave transmission. / Computing architecture. / DNA sequence alignments. / DNA sequence comparison. / Electrical processing. / Electronic computers. / Energy consumption levels. / Implementation approach. / Proposed architectures. / Optical correlation.

All-optical DNA variant discovery utilizing extended DV-curve-based wavelength modulation

Author

Maleki, E.

Publisher

OSA - The Optical Society,

Pub. Year

2018

Subjects

Alignment. / Curve fitting. / DNA sequences. / Genes. / Genetic engineering. / Graphene. / Modulation. / Numerical methods. / Genome sequences. / Global alignment. / Local alignment. / Optical correlators. / Optical processing. / Optical signals. / Post analysis. / Wavelength modulation. / Optical signal processing.

Pip-SW: pipeline architectures for accelerating Smith-Waterman algorithm on FPGA platforms

Author

Kalemati, M.

Publisher

IEEE,

Pub. Year

2024

Subjects

FPGA. / Hardware acceleration. / Pipeline architectures. / Sequence alignment. / Smith-Waterman. / Analog storage. / Benchmarking.

Optical pattern generator for efficient bio-data encoding in a photonic sequence comparison architecture

Author

Akbari Rokn Abadi, S.

Publisher

Public Library of Science,

Pub. Year

2021

Subjects

Adenine. / Bacterial DNA. / Cytosine. / Guanine. / Case study. / Cross correlation. / Data accuracy. / Genetic algorithm. / Image processing. / Information processing. / Nonhuman. / Pattern recognition. / Photonics. / Salmonella. / Sensitivity analysis. / Velocity. / Whole genome sequencing.

Optical pattern generator for efficient bio-data encoding in a photonic sequence comparison architecture

Author

Akbari Rokn Abadi, S.

Publisher

Public Library of Science,

Pub. Year

2021

Subjects

Adenine. / Bacterial DNA. / Cytosine. / Guanine. / Case study. / Cross correlation. / Data accuracy. / Genetic algorithm. / Image processing. / Information processing. / Nonhuman. / Pattern recognition. / Photonics. / Salmonella. / Sensitivity analysis. / Velocity. / Whole genome sequencing.

Integration in analog optical computing using metasurfaces revisited: toward ideal optical integration

Author

Babashah, H.

Publisher

OSA - The Optical Society,

Pub. Year

2017

Subjects

Metamaterials. / Optical data processing. / Signal processing. / Dielectric lens. / Fourier domains. / Low-frequency. / Optical integration. / Optical integrators. / Output response. / Output signal. / Signal processor. / Integration.

Temporal analog optical computing using an on-chip fully reconfigurable photonic signal processor

Author

Babashah, H.

Publisher

Elsevier Ltd,

Pub. Year

2019

Subjects

Dispersion. / Fourier optics. / Integrability. / Integrated optics. / Nonlinear optics. / Optoelectronics. / Chirp modulation. / Dispersion (waves) / Four wave mixing. / Fourier transforms. / Integration. / Light modulators. / Linear transformations. / Optical data processing. / Optoelectronic devices. / All-optical signal processing. / Arbitrary transfer functions. / Dispersive Fourier transforms. / Integrated signal processing. / Mathematical operations. / Photonic-signal processors. / Reconfigurable photonics. / Optical signal processing.

WalkIm: Compact image-based encoding for high-performance classification of biological sequences using simple tuning-free CNNs

Author

Akbari Rokn Abadi, S.

Publisher

Public Library of Science,

Pub. Year

2022

Subjects

Adoption. / Coronavirinae. / Diagnostic test accuracy study. / Metagenomics. / Nonhuman. / Velocity. / Information processing. / Metagenomics. / Methodology. / Data Collection. / Metagenomics. / Neural Networks, Computer. / Research Design.

A new profiling approach for DNA sequences based on the nucleotides' physicochemical features for accurate analysis of SARS-CoV-2 genomes

Author

Akbari Rokn Abadi, S.

Publisher

BioMed Central Ltd,

Pub. Year

2023

Subjects

Alignment-free. / Classification. / Comparison. / k-mer. / SARS-CoV-2.

All-optical wavelength-routed architecture for a power-efficient network on chip

Author

Koohi, S.

Pub. Year

2014

Subjects

Low-power design. / Network architecture and design. / Data communication systems. / Distributed computer systems. / Energy utilization. / Low power electronics. / Microprocessor chips. / Network architecture. / Routers. / All optical switch. / Data transmission delay. / Deterministic routing algorithms. / Emerging technologies. / Interconnection architecture. / Power and energy consumption. / Proposed architectures. / Computer architecture.

Hierarchical opto-electrical on-chip network for future multiprocessor architectures

Author

Koohi, S.

Pub. Year

2011

Subjects

Optical NoC. / Analytical model. / Contention-free. / Data transmission delay. / Energy consumption. / Hierarchical architectures. / Hierarchy. / Its efficiencies. / Lower bounds. / Multi processor architecture. / Network size. / New technologies. / On-chip interconnects. / On-chip networks. / On-chip optical interconnects. / Optical networks. / Optical NoC. / Optical transmissions. / Packet size distribution. / Power consumption. / Power dissipation. / Power reductions. / Processing core. / Proposed architectures. / Scalability problems. / Simulation-based. / Traffic pattern. / Electric losses. / Energy utilization. / Fiber optic networks. / Light transmission. / Mathematical models. / Optical interconnects. / Optical links. / Scalability. / VLSI circuits. / Network architecture.