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    Panel Construction and Haplotype Phasing of Iranian Genomes using Multimodal Genomics Data

    , M.Sc. Thesis Sharif University of Technology Shadrooy Jadid, Mahdi (Author) ; Motahari, Abolfazl (Supervisor)
    Abstract
    In recent decades, genetics has become one of the key pillars in medical and scientific research, and haplotype analysis plays a crucial role in understanding the genetic structure of populations. Haplotypes are specific combinations of alleles at different loci in the genome that are inherited together and provide valuable information about genetic history and intra-population diversity. One of the challenges in this field is the mismatch between the existing reference panels and the genetic characteristics of the Iranian population, as many of these panels have been developed based on data from non-Iranian populations. This mismatch can lead to incorrect results in genetic analyses. In... 

    Train timetabling on double track and multiple station capacity railway with useful upper and lower bounds

    , Article Scientia Iranica ; Volume 24, Issue 6 , 2017 , Pages 3324-3344 ; 10263098 (ISSN) Oroojlooy Jadid, A ; Eshghi, K ; Sharif University of Technology
    2017
    Abstract
    Train scheduling has been one of the significant issues in the railway industry in recent years since it has an important role in efficacy of railway infrastructure. In this paper, the timetabling problem of a multiple-tracked railway network is discussed. More specifically, a general model is presented here in which a set of operational and safety requirements is considered. The model handles the trains overtaking in stations and considers the stations' capacity. The objective function is to minimize the total travel time. Unfortunately, the problem is NP-hard, and real-sized problems cannot be solved in an acceptable amount of time. In order to reduce the processing time, we presented some... 

    Train Timetabling Optimization in Metro Networks

    , M.Sc. Thesis Sharif University of Technology Oroojlooy Jadid, Afshin (Author) ; Koorosh, Eshghi (Supervisor)
    Abstract
    Train scheduling is a significant issue in the railway industry in recent years because it has an important role in railway infrastructure. In this paper, the timetabling problem of a multiple tracked railway network is discussed. More specifically, a general model with specific attention to “Tehran Metro” is presented here in which a set of operational and safety requirements are also considered. The model handles the trains overtaking in a station and innovatively considers the capacity of stations. An objective function is to minimize the total travel time. The problem is NP-hard so the real size problem cannot be solved in acceptable amount of time. In order to reduce the processing time... 

    Study of stochastic sequence-dependent flexible flow shop via developing a dispatching rule and a hybrid GA

    , Article Engineering Applications of Artificial Intelligence ; 2012 , Pages 494-506 ; 09521976 (ISSN) Kianfar, K ; Fatemi Ghomi, S. M. T ; Oroojlooy Jadid, A ; Sharif University of Technology
    2012
    Abstract
    A flexible flow shop is a generalized flow shop with multiple machines in some stages. This system is fairly common in flexible manufacturing and in process industry. In most practical environments, scheduling is an ongoing reactive process where the presence of real time information continually forces reconsideration of pre-established schedules. This paper studies a flexible flow shop system considering non-deterministic and dynamic arrival of jobs and also sequence dependent setup times. The problem objective is to determine a schedule that minimizes average tardiness of jobs. Since the problem class is NP-hard, a novel dispatching rule and hybrid genetic algorithm have been developed to... 

    Vibrational Analysis of Carbon Nanoscroll tubes

    , M.Sc. Thesis Sharif University of Technology Jadid Ahari, Ali (Author) ; Ahmadian, Mohammad Taghi (Supervisor) ; Assempour, Ahmad (Supervisor)
    Abstract
    In recent year carbon nanostructures (CNS) has been the pinnacle of academic and industrial research. After development and refinement of better methods of controlled fabrication of high-quality CNS, these structures started substituting nanotubes in their renowned applications including nanochannels and nanocarriers. Due to the tunable core size of CNS using electric fields, they can be used as controlled ion channels and nanocarriers with controlled drug release as well as more dynamics oriented applications including nano-oscillators, nano-actuators and artificial muscle tissue. However lack of vibrational studies on CNS has hindered researchers in this path. In this thesis vibrational... 

    Gradual domain adaptation via manifold-constrained distributionally robust optimization

    , Article Advances in Neural Information Processing Systems ; Volume 37 , 2024 ; 10495258 (ISSN) Saberi, A ; Najafi, A ; Behjati, A ; Emrani, A ; Zolfi, Y ; Shadrooy, M ; Motahari, A ; Khalaj, B. H ; Sharif University of Technology
    2024
    Abstract
    The aim of this paper is to address the challenge of gradual domain adaptation within a class of manifold-constrained data distributions. In particular, we consider a sequence of T ≥ 2 data distributions P1, ..., PT undergoing a gradual shift, where each pair of consecutive measures Pi, Pi+1 are close to each other in Wasserstein distance. We have a supervised dataset of size n sampled from P0, while for the subsequent distributions in the sequence, only unlabeled i.i.d. samples are available. Moreover, we assume that all distributions exhibit a known favorable attribute, such as (but not limited to) having intra-class soft/hard margins. In this context, we propose a methodology rooted in... 

    Selection of the SFCL Type and its Design in order to Resolve the Problem Associated with the Rise of Grid Short-Circuit Level in a Sample Distribution and a Sample Sub-Transmission Substation of Tehran Regional Electric Company

    , M.Sc. Thesis Sharif University of Technology Samizadeh, Ali (Author) ; Vakilian, Mahdi (Supervisor) ; Fardmanesh, Mahdi (Supervisor)
    Abstract
    In recent years, with the increase in generation capacity and the expansion of power networks, the grid short-circuit level has significantly risen, creating serious challenges for the protection of the network electrical equipment. One effective solution in this context is the use of Superconducting Fault Current Limiters (SFCLs), which, due to their fast transition from the superconducting state to the resistive state, can limit the high fault currents within a short period of time. In this thesis, after reviewing the operating principles, types, and applications of SFCLs, in the first step a semi-industrial prototype of a resistive-type SFCL is tested in the Superconductivity Laboratory... 

    MBBR and MBR Reactor Configuration for Better Performance

    , M.Sc. Thesis Sharif University of Technology (Author) ; Borgheei, Mahdi (Supervisor)
    Abstract
    Membrane bioreactors (MBRs) which are commonly understood as the combination of membrane filtration and biological treatment using activated sludge have several advantages, but membrane fouling reduces the membrane efficiency, permeability and lifetime. An alternative is replacing a moving bed biofilm reactor (MBBR) with the activated sludge system which may reduce the effect of membrane fouling. The sludge produced in MBBRs has poor settling characteristics, therefore, their efficiency is limited by the sedimentation tank performance and they require a larger settling surface. The combination of moving bed biofilm reactors and membrane bioreactors can compensate for the drawbacks of both of... 

    Cooperative Throughput Maximization in a Multi-Cluster WPCN

    , Article IEEE Transactions on Green Communications and Networking ; Volume 8, Issue 4 , 2024 , Pages 1505-1520 ; 24732400 (ISSN) Rezaei, O ; Masjedi, M ; Mahdi Naghsh, M ; Gazor, S ; Mahdi Nayebi, M ; Sharif University of Technology
    2024
    Abstract
    This paper investigates a multi-cluster Wireless Powered Communication Network (WPCN) where user clusters cooperate with a Cluster Head (CH) and a Hybrid Access Point (HAP). Employing beamforming, the HAP supplies energy in the downlink phase, while users transmit signals to the HAP and CHs in the uplink phase. We optimize the Energy Beamforming (EB) matrix, user transmit covariance matrices, and time slot allocation to enhance both max-min and sum network throughput. To tackle the non-convexity of the optimization problems, we decompose them into two subproblems and reformulate each as convex Second Order Cone Programming (SOCP) and Quadratic Constraint Quadratic Programming (QCQP) for the... 

    Forecasting the effects of a Canada-US currency union on output and prices: A counterfactual analysis

    , Article Journal of Forecasting ; Volume 32, Issue 7 , 2013 , Pages 639-653 ; 02776693 (ISSN) Mahdi Barakchian, S ; Sharif University of Technology
    2013
    Abstract
    This paper is a counterfactual analysis investigating the consequences of the formation of a currency union for Canada and the USA: whether outputs increase and prices decrease if these countries form a currency union. We use a two-country cointegrated model to conduct the counterfactual analysis, where the conditional forecasts are generated based on the Gaussian assumption. To deal with structural breaks and model uncertainty, conditional forecasts are generated from different models/estimation windows and the model-averaging technique is used to combine the forecasts. We also examine the robustness of our results to parameter uncertainty using the wild bootstrap method. The results show... 

    Evaluation of Non-linear Combination Method (Neural Network) For Value-at-Risk Forecasting in Market

    , M.Sc. Thesis Sharif University of Technology Rashnavadi, Leila (Author) ; Barakchian, Mahdi (Supervisor)
    Abstract
    Value at risk of an asset, is the asset’s expected maximum loss for a certain period of time and at a specified confidence level. Value-at-Risk can be calculated in the bank with its inter-nal method or standardized method. when a method have more violation number then bank need to keep more daily capital requirements. under the Basel 2 agreement if the violation of method more than 10 times in year, the Bank uses the standardized method.
    There are trade off Between daily capital charge and violations. Therefore, existing methods for calculating the value at risk, usually lead to much daily capital charge or many violations. Studies show with combination of different methods to calculate... 

    Using Complex Network Metrics for Evaluating the Influence of Conference and Journal Papers in Computer Science

    , M.Sc. Thesis Sharif University of Technology Habibi, Fatemeh (Author) ; Jalili, Mahdi (Supervisor)
    Abstract
    Journals and conferences in computer science are the major venue for publishing new achievement in the field. It is an expert opinion that a number of top conferences in computer science are even more important than journals. In this work we aim at studying this in terms of citation analysis. To this end, we took 100 top journals and 63 top conferences and extracted their citation graph through Scopus dataset. We then constructed the citation graph in which the nodes were the journals and conferences and the links corresponded to the citations of the papers. We used various measures to rank the nodes in the graph. The ranking methods included Prestige, PageRank, Eigenfactor, HITS and SALSA.... 

    Design and Implementation of a VLSI Architecture for Time and Frequency Synchronization in the LTE

    , M.Sc. Thesis Sharif University of Technology Golnari, Amene (Author) ; Shabany, Mahdi (Supervisor)
    Abstract
    The long term evolution (LTE) standard is introduced and developed by the 3rd generation partnership project (3GPP) based on orthogonal frequency division multiplexing (OFDM). OFDM systems, in spite of having many advantages such high performance in bandwidth usage, are very sensitive to inter carrier interference (ICI) as a drawback. In order to prevent ICI, the frequency offset, mainly caused by the miss-match between oscillators' frequency and also between the sampling frequency of the transmitter and the receiver, should be estimated and compensated. Frequency synchronization is a part of the tasks of a synchronizer. In this thesis, main tasks of a synchronizer are illustrated and... 

    A New Approach in Value-at-Risk (VaR) Estimation by Forecast Combination Methods

    , M.Sc. Thesis Sharif University of Technology Seraj, Mostafa (Author) ; Barakchian, Mahdi (Supervisor)
    Abstract
    Value-at-Risk (VaR) is the most commontool for risk management. This tool is used to measure market risk and also used as a basis in determining financial standards for international financial institutions. VaR is the maximum loss of the asset portfolio at the specified confidence level and certain time horizon. Many parametric, nonparametric and semi parametric methods have been invented for VaR estimation. Each one of these methods has its advantages and disadvantages and different methods may perform better in differnet situations.When estimating VaR, we can choose one of these methods or we can combine the VaRs estimated by different methods. There are few researches conducted on VaR... 

    EEG Brain Functional Network Analysis in Cortex Level

    , M.Sc. Thesis Sharif University of Technology Pedrood, Bahman (Author) ; Jalili, Mahdi (Supervisor)
    Abstract
    Complex networks science have received tremendous attention in recent years and the brain is one of the systems to which graph theoretical tools have been applied. Alzheimer’s disease (AD) is a neurodegenerative disease affecting many of elderly population. AD changes the anatomy of the brain, which subsequently results in changes in its functions. These changes have been frequently reported in signals recorded from the brain (such as MEG, fMRI and EEG). Among these neuroimaging techniques EEG is one of the most aproprate methods for extracting functional connectivites according to high temporal resolution. In this thesis, we aimed at analyzing the properties of EEG-based functional networks... 

    Learning Improvement in Phase Oscillator Models

    , M.Sc. Thesis Sharif University of Technology Aghighi, Meysam (Author) ; Jalili, Mahdi (Supervisor)
    Abstract
    In the recent years, the problem of modeling a cognitive task using phase oscillators has been receiving a significant attention. In this view, single neurons are no longer elementary computational units. Rather, coherent oscillating groups of neurons are seen as nodes of networks performing cognitive tasks. From this assumption, we develop a model of stimulus-response learning and recognition. The most significant part of our work is defining learning methods for natural frequencies and coupling weights in a coupled phase oscillator network under Kuramoto conditions. In this thesis, we improved the previous models by not only emphasizing on the frequency of the oscillators but also taking... 

    Evaluation of Caviar Models Incorporated with Intraday Information ,the Case Study:Estimation Value at Risk of Gold

    , M.Sc. Thesis Sharif University of Technology Karimi, Parvane (Author) ; Barakchian, Mahdi (Supervisor)
    Abstract
    Value at risk (VaR) is the maximum loss of the asset portfolio at the specified confidence level and certain time horizon. This tool is used to measure market risk and also used as a basis in determining financial standards for international financial instituation. Conditional Autoregressive Value at Risk models or CAViaR models introduced by Engle and Manganelli (2004). This models calculate VaR base on quantile regession approach and show some promising performance properties.
    In order to propose a more accurate model for calcutating VaR , we develop CAViaR models by incorporating them with intraday information then we calculate VaR with this kind of models and CAViaR... 

    Design and Implementation of a Spectrum Sensor for Cognitive Radio

    , M.Sc. Thesis Sharif University of Technology Safavi, Mahya (Author) ; Shabani, Mahdi (Supervisor)
    Abstract
    Frequency scarcity has emerged the necessity of opportunistic utilization of frequency bands, which can be realized through a cognitive radio system. During an agile communication between unlicensed users, a cognitive radio system must avoid collision with licensed users. Hence it should continuously observe the band of interest and report the presence of licensed user signals. This task is fulfilled by a vital part of a cognitive radio system, called the spectrum sensing core. Recently several techniques have been proposed for the spectrum sensing in literature. Some of them like matched filtering, cyclostationarity based detection are based on primary user signal features. However energy... 

    VLSI Architecture of Turbo Decoder for LTE

    , M.Sc. Thesis Sharif University of Technology Ardakani, Arash (Author) ; Shabany, Mahdi (Supervisor)
    Abstract
    Long Term Evolution (LTE) aims the peak data rates in excess of 300 Mb/s, which may appear to be challenging to achieve due to the existence of some blocks such as the turbo decoder. One efficient approach to achieve this throughput is by parallelizing the Log Maximum a Posteriori (MAP) algorithm in the turbo decoder. In fact, the interleaver is known to be a major challenging part of the turbo decoder due to its need to the parallel interleaved memory access. LTE uses Quadratic Permutation Polynomial (QPP) interleaver, which makes it suitable for the parallel decoding. In this thesis, first, we propose an efficient architecture for the QPP interleaver, called the Add-Compare-Select (ACS)... 

    Efficient Hardware Implementation of ECG Derived Respiration (EDR) System, Applied to Body Area Network (BAN)

    , M.Sc. Thesis Sharif University of Technology Shayei, Ali (Author) ; Shabany, Mahdi (Supervisor)
    Abstract
    The rapid growth in the health care technology, has made the Body Area Network (BAN) as an attracting topic for research and design development. BAN devices have restrictions on their size and power consumption. Monitoring the respiratory signal is crucial in many medical applications and is normally part of a BAN system. Traditional methods for the respiration measurement are normally based on measuring the volume of air inhaled and exhaled by lungs (like a spirometer) or oxygen saturation in blood. However, these methods have numerous drawbacks including their high cost and limited accessibility. In this thesis, a novel scheme is proposed to derive the respiratory signal from the...