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Parallel clustering on the star graph
, Article 6th International Conference on Algorithms and Architectures for Parallel Processing, ICA3PP, Melbourne, 2 October 2005 through 3 October 2005 ; Volume 3719 LNCS , 2005 , Pages 287-292 ; 03029743 (ISSN); 3540292357 (ISBN); 9783540292357 (ISBN) ; Sarbazi Azad, H ; Farivar, R ; Sharif University of Technology
2005
Abstract
In this paper, a parallel algorithm for data clustering is presented on a multi-computer with star topology. This algorithm is fast and requires a small amount of memory per processing element, which makes it even suitable for SIMD implementation. The proposed parallel algorithm completes in O(K+S 2-T 2) steps for a clustering problem of N data patterns with M features per pattern and K clusters, where N.M = S!, K.M = T!, and M=R!, on a s-star interconnection network. © Springer-Verlag Berlin Heidelberg 2005
Comparing Meta-Heuristic Algorithms for Solving Transportation Network Design Problem
, M.Sc. Thesis Sharif University of Technology ; Zokaei Aashtiani, Hedayat (Supervisor)
Abstract
Discrete network design problem is selecting a set of feasible projects among a set of candidate projects, considering a budget constraint in which user's cost is being minimized. Network design problem is one of the complicated problems in transportation science, since it is a bi-level problem in which the lower level is a traffic assignment problem and the upper level is finding the best set of arcs. Meta-heuristic algorithms can be used to solve this problem. Although, there is no guarantee to find the optimal solution by Meta-heuristic algorithms, but they find good solutions in short times. The purpose of this study is comparing the efficiency of three Meta-heuristic algorithms for...
A cordic-based processor extension for scalar and vector processing
, Article 19th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2005, Denver, CO, 4 April 2005 through 8 April 2005 ; Volume 2005 , 2005 ; 0769523129 (ISBN); 0769523129 (ISBN); 9780769523125 (ISBN) ; Fazeli, M ; Sarbazi Azad, H ; Sharif University of Technology
2005
Abstract
Trigonometric calculations play a significant role in scientific and multimedia applications. Such applications usually use vectors of data, thus it is essential to use SIMD-based computing for them. State of the art processors such as Pentium family processors have SIMD capabilities, MMX, SSE and SSE2 to name a few. But these extensions usually come short of performing trigonometric functions calculation. This paper presents a CORDIC-based vector processor extension to accelerate trigonometric calculations. The suggested architecture works with a vector of data, as well as scalar data. This architecture has been Synthesized both for FPGA and ASIC and the results have shown a significant...
Directed flooding: A fault-tolerant routing protocol for wireless sensor networks
, Article Systems Communications 2005, Montreal, 14 August 2005 through 17 August 2005 ; Volume 2005 , 2005 , Pages 395-400 ; Fazeli, M ; Miremadi, S. G ; Sharif University of Technology
2005
Abstract
Wireless sensor networks consist of small nodes with sensing, computation, and wireless communicationr capabilities. Many routing protocols have been specifically designed for WSNs where energy awareness is an essential design issue. Routing protocols in WSNs might differ depending on the application and network architecture. In this article, a fault-tolerant and energy efficient routing protocol for wireless sensor networks is proposed This protocol is called Directed Flooding, and is a descendant of the Flooding routing protocol, which consumes less energy, while maintaining high levels of fault-tolerance. This is done by Tending data in a specific aperture instead of broadcasting, which...
Influence of pile head restraint on the performance of floating elevated energy pile groups in soft clay
, Article Computers and Geotechnics ; Volume 154 , 2023 ; 0266352X (ISSN) ; Jafarzadeh, F ; Leung, A. K ; Sharif University of Technology
Elsevier Ltd
2023
Abstract
Thermal elongation of energy piles (EPs) depends on the end restraints to displacement. The EP head is restrained by a working load and non-energy piles (NEPs) within an energy pile group, depending on the cap rigidity. The existence of both EPs and NEPs in non-symmetrical thermally loaded energy pile groups imposes different restraints on EP heads, resulting in different pile elongations. This would induce load redistribution between the piles, thereby influencing the serviceability of energy pile groups in soft soil. In this paper, a 3-D numerical parametric study was conducted after back-analysing a centrifuge test on a floating elevated energy pile group subjected to cyclic...
Thermal Cyclic Effects on the Long-Term Behaviour of Elevated Floating Energy Pile Groups in Saturated Lightly Overconsolidated Clay by Centrifuge Modelling
, Ph.D. Dissertation Sharif University of Technology ; Jafarzadeh, Fardin (Supervisor)
Abstract
There is an increasing interest and use of energy foundations worldwide. Heat transfer from/to energy piles may cause plastic contraction of soft clay with a low overconsolidation ratio (OCR) during heating and cooling. This can influence pile-soil interaction due to thermally induced excess pore water pressure and changes of lateral stress acting on the pile.These thermally induced phenomena cause additional plastic settlement of the soil and pile. The irreversible settlement may cause serviceability or even ultimate limit state problems for floating energy piles whose capacity is mainly derived from shaft resistance. Due to intended operational needs or by accident, cyclic non-symmetrical...
Reliability Analysis of Concrete Gravity Dam with Foundation's Parameters Uncertainty Based on Nonlinear Finite Element Model
, M.Sc. Thesis Sharif University of Technology ; Ghaemian, Mohsen (Supervisor) ; Toufigh, Vahab (Supervisor)
Abstract
In this study reliability and sensitivity analysis of the parameters of a concrete gravity dam have been proposed regarding to their probabilistic behavior. At first, the uncertainty of concrete fracture energy (GF), Foundation’s elasticity modulus (E_f), and the Peak ground acceleration (PGA) are considered according to their probability density function (pdf). The uncertainty sources are inserted in the model using the Latin Hyper Cube Sampling method (LHS) in order to do reliability analysis of the model. Monte Carlo method is one of the most popular methods for reliability analysis of numerical models. Taking this method in uncertainty analysis would evaluate the effects of the inputs on...
Network vulnerability analysis through vulnerability take-grant model (VTG)
, Article 7th International Conference on Information and Communications Security, ICICS 2005, Beijing, 10 December 2005 through 13 December 2005 ; Volume 3783 LNCS , 2005 , Pages 256-268 ; 03029743 (ISSN); 3540309349 (ISBN); 9783540309345 (ISBN) ; Sadoddin, R ; Jalili, R ; Zakeri, R ; Omidian, A. R ; Sharif University of Technology
2005
Abstract
Modeling and analysis of information system vulnerabilities helps us to predict possible attacks to networks using the network configuration and vulnerabilities information. As a fact, exploiting most of vulnerabilities result in access rights alteration. In this paper, we propose a new vulnerability analysis method based on the Take-Grant protection model. We extend the initial Take-Grant model to address the notion of vulnerabilities and introduce the vulnerabilities rewriting rules to specify how the protection state of the system can be changed by exploiting vulnerabilities. Our analysis is based on a bounded polynomial algorithm, which generates the closure of the Take-Grant graph...
Sequence dependence of the binding energy in chaperone-driven polymer translocation through a nanopore
, Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 83, Issue 1 , January , 2011 ; 15393755 (ISSN) ; Ejtehadi, M. R ; Metzler, R ; Sharif University of Technology
2011
Abstract
We study the translocation of stiff polymers through a nanopore, driven by the chemical-potential gradient exerted by binding proteins (chaperones) on the trans side of the pore. Bound chaperones prevent backsliding through the pore and, therefore, partially rectify the polymer passage. We show that the sequence of chain monomers with different binding affinity for the chaperones significantly affects the translocation dynamics. In particular, we investigate the effect of the nearest-neighbor adjacency probability of the two monomer types. Depending on the magnitude of the involved binding energies, the translocation speed may either increase or decrease with the adjacency probability. We...
First passage time distribution of chaperone driven polymer translocation through a nanopore: Homopolymer and heteropolymer cases
, Article Journal of Chemical Physics ; Volume 135, Issue 24 , 2011 ; 00219606 (ISSN) ; Metzler, R ; Ejtehadi, M. R ; Sharif University of Technology
2011
Abstract
Combining the advection-diffusion equation approach with Monte Carlo simulations we study chaperone driven polymer translocation of a stiff polymer through a nanopore. We demonstrate that the probability density function of first passage times across the pore depends solely on the Péclet number, a dimensionless parameter comparing drift strength and diffusivity. Moreover it is shown that the characteristic exponent in the power-law dependence of the translocation time on the chain length, a function of the chaperone-polymer binding energy, the chaperone concentration, and the chain length, is also effectively determined by the Péclet number. We investigate the effect of the chaperone size on...
Reply: Abedpour, asgari, and tabar
, Article Physical Review Letters ; Volume 106, Issue 20 , 2011 ; 00319007 (ISSN) ; Asgari, R ; Tabar, M. R. R ; Sharif University of Technology
2011
Irreversibility in response to forces acting on graphene sheets
, Article Physical Review Letters ; Volume 104, Issue 19 , May , 2010 ; 00319007 (ISSN) ; Asgari, R ; Tabar, M. R. R ; Sharif University of Technology
2010
Abstract
The amount of rippling in graphene sheets is related to the interactions with the substrate or with the suspending structure. Here, we report on an irreversibility in the response to forces that act on suspended graphene sheets. This may explain why one always observes a ripple structure on suspended graphene. We show that a compression-relaxation mechanism produces static ripples on graphene sheets and determine a peculiar temperature Tc, such that for T
Analysis of design goals of cryptography algorithms based on different components
, Article Indonesian Journal of Electrical Engineering and Computer Science ; Volume 23, Issue 1 , 2021 , Pages 540-548 ; 25024752 (ISSN) ; Aref, M. R ; Khorshiddoust, R. R ; Sharif University of Technology
Institute of Advanced Engineering and Science
2021
Abstract
Cryptography algorithms are a fundamental part of a cryptographic system that is designed and implemented to increase information security. They are the center of attention of experts in the information technology domains. Although the cryptography algorithms are implemented to attain the goals such as confidentially, integrity, and authenticity of designing, but other matters that must be noticed by designers include speed, resource consumption, reliability, flexibility, usage type, and so on. For the useful allocation of hardware, software, and human resources, it is important to identify the role of each of the factors influencing the design of cryptographic algorithms to invest in the...
Conservation of statistical results under the reduction of pair-contact interactions to solvation interactions
, Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 72, Issue 6 , 2005 ; 15393755 (ISSN) ; Farzami, R. R ; Ejtehadi, M. R ; Sharif University of Technology
2005
Abstract
We show that the hydrophobicity of sequences is the leading term in Miyazawa-Jernigan interactions. Being the source of additive (solvation) terms in pair-contact interactions, they were used to reduce the energy parameters while resulting in a clear vector manipulation of energy. The reduced (additive) potential performs considerably successful in predicting the statistical properties of arbitrary structures. The evaluated designabilities of the structures by both models are highly correlated. Suggesting geometrically nondegenerate vectors (structures) as proteinlike structures, the additive model is a powerful tool for protein design. Moreover, a crossing point in the log-linear diagram of...
Multifunctional hyperelastic structured surface for tunable and switchable transparency
, Article Applied Sciences (Switzerland) ; Volume 11, Issue 5 , 2021 , Pages 1-11 ; 20763417 (ISSN) ; Goudarzi, T ; Fleury, R ; Naghdabadi, R ; Sharif University of Technology
MDPI AG
2021
Abstract
We leverage the crucial hyperelastic properties of a multifunctional structured surface to optimize the reconfigurability of the electromagnetic transmission under large nonlinear mechanical deformations. This multiphysics, multifunctional, hyperelastic structured surface (HSS) offers two simultaneous intriguing functionalities; tunability and switchability. It is made of copper reso-nators and a Polydimethylsiloxane (PDMS) substrate, which is one of the most favorable deformable substrates due to its hyperelastic behavior. The proposed HSS is fabricated via an original cost-effective technique and the multiphysics functionalities are captured in both experimental tests and numerical...
MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments
, Article PLoS Computational Biology ; Volume 18, Issue 6 , 2022 ; 1553734X (ISSN) ; Modegh, R. G ; Rabiee, H. R ; Sarbandi, E. R ; Rezaie, N ; Tam, K. T ; Forrest, A. R. R ; Sharif University of Technology
Public Library of Science
2022
Abstract
Hi-C is a genome-wide chromosome conformation capture technology that detects interactions between pairs of genomic regions and exploits higher order chromatin structures. Conceptually Hi-C data counts interaction frequencies between every position in the genome and every other position. Biologically functional interactions are expected to occur more frequently than transient background and artefactual interactions. To identify biologically relevant interactions, several background models that take biases such as distance, GC content and mappability into account have been proposed. Here we introduce MaxHiC, a background correction tool that deals with these complex biases and robustly...
SER of M-PSK modulation in incremental-selective decode-and-forward cooperative communications over Rayleigh fading channels
, Article International Conference on Advanced Communication Technology, ICACT, 13 February 2011 through 16 February 2011 ; February , 2011 , Pages 432-437 ; 17389445 (ISSN) ; 9788955191554 (ISBN) ; Saadat, R ; Aref, M. R ; Mirjalily, G ; Sharif University of Technology
2011
Abstract
In this paper we consider a cooperative communication systems over Rayleigh fading channels. The system utilizes a combination of incremental and selective decode-and-forward (ISDF) relaying protocols. The symbol error rate (SER) of M-PSK modulation for the ISDF protocol is derived. Using an approximation of the SER expression, the optimal power allocation is investigated. In order to reduce the complexity of the receiver, we used a modified version of the ISDF protocol which does not use the storage or retransmission of the first phase signal. We also derived optimal power allocation coefficient for modified ISDF. It has been noted that for the optimal power allocation in the ISDF protocol,...
Power allocation for incremental-selective decode-and-forward cooperative communications over Rician fading channels
, Article International Conference on Advanced Communication Technology, ICACT, 13 February 2011 through 16 February 2011 ; February , 2011 , Pages 730-734 ; 17389445 (ISSN) ; 9788955191554 (ISBN) ; Saadat, R ; Aref, M. R ; Mirjalily, G ; Sharif University of Technology
2011
Abstract
In this paper we consider a relaying communication system over Rician fading channels. In this system we assume simple Incremental-Selective Decode-and-Forward (ISDF) protocol, which is jointly combining incremental and selective DF relaying protocols. In this protocol, storage or retransmission of the first phase signal are not allowed. We analyze the symbol error rate (SER) performance of the recommended protocol with M-PSK modulation. We evaluate the performance of the protocol in the frequency nonselective slow Rician fading channels. Using the approximation of the SER expression, the optimal power allocation is investigated. Our results show that at least 50% of total power must be used...
Efficient and practical protocol for silylation of hydroxyl groups using reusable lithium perchlorate dispread in silica gel under neutral condition [electronic resource]
, Article Journal of Organometallic Chemistry ; 2006, Volume 691, Issue 5, Pages 817–820 ; Yousefi, R ; Saidi, M. R ; Sharif University of Technology
Abstract
A very efficient and mild procedure for the trimethylsilylation of a wide variety of alcohols, including primary, allylic, benzylic, secondary, hindered secondary, tertiary, and phenols with hexamethyldisilazane on the surface of silica gel dispersed with LiClO4 in room temperature at few minutes in excellent yields under neutral conditions is reported. This procedure also allows the excellent selectivity under LP-SiO2 system for silylation of alcohols in the presence of amine and phenolic hydroxy groups
Modeling, estimation, and model predictive control for Covid-19 pandemic with finite security duration vaccine
, Article 30th International Conference on Electrical Engineering, ICEE 2022, 17 May 2022 through 19 May 2022 ; 2022 , Pages 78-83 ; 9781665480871 (ISBN) ; Baghbadorani, R. R ; Sharif University of Technology
Institute of Electrical and Electronics Engineers Inc
2022
Abstract
Spreading Covid19 has significantly impacted humans' affairs worldwide, either economically or in a sanitary manner. Besides social distance and hospitalization, making and introducing different vaccines help us ameliorate infection and mortality rates. In this research, we use a nonlinear dynamic model for Covid19, with eight states named susceptible, exposed, infected, quarantined, hospitalized, recovered, deceased, and insusceptible populations. Also, we use social distancing, hospitalization, and vaccination rate as three control inputs. This research aims to stop the Covid-19 from spreading worldwide and minimize exposed, infected and deceased populations using model predictive control....